How close to flat are you? Can you post a picture?
Also, is the base a flat plane, or is there a recess?
I always turn the foot slightly concave to insure the only contact points are along the rim. If you do it this way, then HAND sanding the foot level becomes a breeze - assuming you are within shooting range off the lathe and only doing micro-adjustments.
Re-mounting a bowl without a center reference mark isn't always fun (for me!) and often leads to bigger probs than just tweaking it by hand.
Even better than hand sanding is using a rasp. Even better than that is using a block plane, router plane (for me).