I usually trim endgrain to knife lines or plane and pare it to exact length after assembly. But sometimes, I try shooting it on a bench hook which I use as a shooting board.
I generally have the following problem: I never get a perfectly square end when I do this. The end is usually bellied or slanted a tiny bit, and if I flip it, I'll take shavings off from the top or bottom, which weren't being taken off before. Often the face also gets out of square by 1mm or so. I contribute this to two possible factors:
1: I usually have a slight camber on my iron. Do you guys use a perfectly flat iron when shooting? Or do you ensure that the piece is raised so that it is exactly in the center of the plane iron?
2: The plane seems to take just enough off of my benchhook / shooting board to take it out of square (lengthwise, if not also thickness wise). Usually no thicker than the blade itself protrudes, but still...